Best Coconut Chocolate Chip Vegan Cupcakes
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Cook18 min
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Total38 min
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Servings12

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These vegan coconut chocolate chip cupcakes deliver sweetness with plant-based ingredients. This recipe uses dairy-free coconut milk and coconut oil instead of traditional butter and milk, making them naturally vegan. The chia seeds work as a binder, replacing eggs while adding nutrition. Agave nectar sweetens without refined sugar, and apple cider vinegar reacts with baking soda to help them rise. You’ll notice the coconut flour’s richness pairs beautifully with mini chocolate chips. These cupcakes deliver deeper, more interesting taste complexity.
Best Vegan Cupcake Ingredients
Ingredients:
Best Coconut Chocolate Chip Vegan Cupcakes
by veganpreps.com

Ingredients
- 3/4 cup (90g) gluten-free all-purpose baking flour
- 1/4 cup (28g) coconut flour
- 3/4 teaspoon baking powder
- 1 teaspoon baking soda
- 1/4 teaspoon salt
- 2 tablespoons chia seeds
- 6 tablespoons water (for chia egg)
- 2/3 cup (160ml) water
- 1 1/3 cups (315ml) dairy-free vanilla coconut milk
- 1/2 cup (120ml) coconut oil, melted and cooled
- 1/4 cup (85g) agave nectar
- 1 teaspoon apple cider vinegar
- 1 teaspoon vanilla extract
- 1/2 cup (90g) dairy-free mini chocolate chips
Instructions
- 1Preheat oven to 175°C (350°F). Line a standard 12-cup muffin tin with paper liners. In a small bowl, combine chia seeds with 6 tablespoons of water, stir, and set aside for 10 minutes until gel forms.
- 2In a large bowl, sift together gluten-free flour, coconut flour, baking powder, baking soda, and salt.
- 3In a separate bowl, whisk together the chia egg, 2/3 cup water, coconut milk, melted coconut oil, agave nectar, apple cider vinegar, and vanilla extract until combined.
- 4Pour wet ingredients into dry ingredients and fold gently until just combined — do not overmix. Fold in chocolate chips.
- 5Divide batter evenly among the 12 muffin cups, filling each about 3/4 full. Bake for 18-20 minutes until a toothpick inserted in the center comes out clean.
- 6Cool in the tin for 5 minutes, then transfer to a wire rack and cool completely before serving.
Notes
- Store leftovers in an airtight container in the fridge for up to 4 days.
- This recipe freezes well for up to 3 months. Thaw overnight in the fridge before reheating.
- Adjust seasoning to taste after reheating, as flavors can mellow during storage.
When selecting ingredients for this recipe, grab pure and unrefined coconut oil for the best coconut flavor, and check that the chocolate chips are dairy-free to keep the vegan nature of the cupcakes. The quality of the gluten-free flour blend matters a lot, since different brands soak up liquids differently – using a quality all-purpose gluten-free flour will give you the most consistent results. Also, use raw chia seeds rather than cooked, since they’ll properly soak up the water and create the right binder consistency. Once your cupcakes are baked, you can enhance their presentation with cupcake decorating supplies* to create a beautiful finished product.
Chia Seeds Bind Wet Ingredients

Begin by preheating your oven to 350 degrees. Sift together the dry ingredients – 3/4 cup gluten-free all purpose baking flour, 1/4 cup coconut flour, 3/4 teaspoon baking powder, 1 teaspoon baking soda, and 1/4 teaspoon salt – and set this mixture aside. Prepare the chia seed mixture by combining 2 tablespoons chia seeds with water according to package directions, then set it aside to thicken.
In a separate bowl, mix all the liquid ingredients together: 2/3 cup water, 1 1/3 cups dairy-free vanilla coconut milk, 1/2 cup coconut oil (warmed to liquefy), 1/4 cup agave nectar, 1 teaspoon apple cider vinegar, and 1 teaspoon vanilla extract. Pour the wet ingredients into the dry ingredients while stirring rapidly, then add the thickened chia seed mixture and 1/2 cup mini chocolate chips. The chia seeds work as a binder in this dairy-free recipe, helping to hold the wet and dry components together. Allow the batter to rest for 15 minutes so the chia seeds can fully soak up the liquid and bind the mixture.
Insert cupcake liners into a muffin tin and scoop the batter evenly into each liner. Bake for 15 to 20 minutes until a toothpick inserted into the center of a cupcake comes out clean. Remove from the oven and allow the cupcakes to cool before serving.
Coconut Oil Replaces Butter Easily
Coconut oil works great as a dairy-free substitute for butter in these cupcakes, and it improves the texture and moisture of your baked goods. Warm it first to liquefy it, which helps it blend smoothly with the other wet ingredients. The fat content in coconut oil creates a tender crumb structure, so your cupcakes stay moist longer. You’ll notice the subtle coconut flavor works well with the chocolate chips. Since coconut oil solidifies when cool, be sure you mix it while it’s still warm – this prevents lumps and makes sure the oil spreads evenly throughout your batter.
Pair With Vegan Buttercream Frosting
Once your cupcakes have cooled completely, top them with a rich vegan buttercream frosting that complements the chocolate and coconut flavors. Blend softened vegan butter with powdered sugar, adding a splash of coconut milk and vanilla extract until you get a smooth, spreadable consistency. The coconut milk works well with the cupcakes’ base flavors. You can pipe the frosting decoratively or spread it simply – either way works great. For extra indulgence, sprinkle toasted coconut flakes or mini chocolate chips on top before the frosting sets, creating nice texture contrast.
Final Thoughts
These vegan coconut chocolate chip cupcakes come together quickly and produce excellent results without any animal products. The coconut flour adds moisture while the chocolate chips provide satisfying sweetness. The chia seed mixture works as an egg replacer, binding everything together perfectly.
In This Recipe.

